Tisslet tissues-based learning estimation for transcriptomics

Ahmed Miloudi, Aisha Al-Qahtani*, Thamanna Hashir, Mohamed Chikri*, Halima Bensmail*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

In the context of multi-omics data analytics for various diseases, transcriptome-wide association studies leveraging genetically predicted gene expression hold promise for identifying novel regions linked to complex traits. However, existing methods for multi-tissue gene expression prediction often fail to account for tissue-tissue expression interactions, limiting their accuracy and effectiveness. This research addresses the challenge of predicting gene expression across multiple tissues by incorporating tissue-tissue expression correlations based on a nonlinear multivariate model. Our findings demonstrate that this model excels in estimating tissue-tissue interactions and accurately predicting missing data. These results have significant implications for multi-omics data analytics and transcriptome-wide association studies, suggesting a novel approach for identifying regions associated with complex traits.

Original languageEnglish
Article number65
JournalBMC Bioinformatics
Volume26
Issue number1
DOIs
Publication statusPublished - Dec 2025

Keywords

  • EQTL
  • Likelihood estimator
  • Machine learning
  • Multiple-tissues
  • Sparse covariance matrix
  • Transcriptomics

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